Scaffold Ga0101443_116204

Overview

Basic Information

• Taxon OID: 3300006617
• Scaffold ID: Ga0101443_116204
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ09 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9910
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013531	Metagenome / Metatranscriptome	270	Y
F097272	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101443_11620412	F097272	GGAGG	MDLTEFGLDKLEAGETSGGGEKVKPGRYNLQYAGSEMIEGRNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLVKMLNAMGVASMKNTDELLGKKVEGELVVGEKGYLEIADNFGNGWKPYGTTTAKENVDPKEVLPKEEIFPSDVDDEDDLPF*
Ga0101443_1162048	F013531	GGAGG	MVNEKKEQPLLSFSDKDGNPREIFEKDLTDRIKPLVEEISRDLGAERELGEAYQLAMKTVHHMESVRKNVANALEKLEAELPPYKKPVKIEGVTKEVN*