Scaffold Ga0101440_118721

Overview

Basic Information

• Taxon OID: 3300006616
• Scaffold ID: Ga0101440_118721
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ06 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7698
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F001217	Metagenome / Metatranscriptome	745	Y
F021302	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101440_1187211	F000918	N/A	MYKSKCKAWNEVMNSFKEDERQTAICQKMYGQDNLYGLTEEQKKAFWKAI*
Ga0101440_11872112	F001217	N/A	MSKTKFNGFEKYFIQTALRHAIQEAESDVLATESAGKRSLYAPGYFTSVGNEIIDKVNSMTLKKYQD*
Ga0101440_11872121	F021302	N/A	MQTLIQKFKKNRRKAKHVKFLHLKIAELHNEIISESFKGEFQFNKGITIIHSNIENKAKLLRKYNRRLKLIVY*