Scaffold Ga0101440_115355

Overview

Basic Information

• Taxon OID: 3300006616
• Scaffold ID: Ga0101440_115355
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ06 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4708
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014506	Metagenome / Metatranscriptome	262	Y
F020899	Metagenome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101440_1153554	F020899	AGG	MRKYIILILFVILSCQPEELMIVEPLPQYEMIFEESESSVTDGQEFSFEIISEEEHQLVISKDGSVIAKESFLPTLELNTRKLYTKSLPNDLLKLELINSSGVIKNTFIQIY*
Ga0101440_1153558	F014506	N/A	VTNTANLMVYDNMKQVGLTVGRSKVSLNDNYQVTWVDGVNVTYMRNFSMNSTTLSLSRMKPLGKWGTVGVGINYSFMFGKDALGNKMPKMGSGGYNFLYTNMVKVNERIMYTPAIIMAQNPISYTQKMDGFDAFSSTSKDIIGILANSFTIQLTKSFSFNAGWTIIYSSNEFVPIMNSFMVGAKLPF*