NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101440_111732

Scaffold Ga0101440_111732


Overview

Basic Information
Taxon OID3300006616 Open in IMG/M
Scaffold IDGa0101440_111732 Open in IMG/M
Source Dataset NameMarine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ06 time point
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5911
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002542Metagenome / Metatranscriptome550Y
F091982Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0101440_11173210F091982AGAAGGMSFRAFDLLKLVEDFGETLTLRKITTDGTYNPATGSVDNSSTTDYSFTGYFYDYSSANPEEVIRGVRKCVVPYLGVGIDPFPDDLIIGNGDAVKVTRAVSIFSNGVAMC
Ga0101440_1117328F002542GGAGMHPSYLGWQVDWPVFIKMPVTADNRDWKRGDHFNWLERGLHQDKVAILYASGYLYHNEELVVQTKVGDRLSEFSGKQLELLVNLLNSEVKSRTSSTAEFNTKKCKKSKIDDKQRGLIRRFLNNNRWITEDYYKIRDNILGE*

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