Scaffold Ga0101440_108500

Overview

Basic Information

• Taxon OID: 3300006616
• Scaffold ID: Ga0101440_108500
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ06 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7896
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008883	Metagenome / Metatranscriptome	326	Y
F023856	Metagenome / Metatranscriptome	208	Y
F024320	Metagenome / Metatranscriptome	206	Y
F056585	Metagenome	137	N
F056586	Metagenome	137	N
F057340	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101440_10850019	F057340	GGAG	VKRLLLLLLLSGCVTEPDTRICAEYGSYTIVKERCIPMYGALICADEEVTQVFCKRYFEDEKKEN*
Ga0101440_1085002	F008883	GAGG	MNFGRYTIWYNHEDHVWDIYDSRKGFKYPEYTINNYSRLLCGLRDKLGFLDTDKNHRRFWEVLRWWSKLRHGRYSPWN*
Ga0101440_1085004	F056586	GGAGG	VKQTYQVIMTKVYEVKVEAESREEAEEIFDNFGDWEELLRVHTLDAEPLNYPALLRKED*
Ga0101440_1085006	F056585	AGGAGG	MTRETWEMWADEYQEYYEDDTPVYPDDLGEWKKEEQKVIDEVIQALQGVTA*
Ga0101440_1085007	F024320	AGGGGG	MTFEEYEQGYYEGDSGDPSGPSEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYKHLEMLMVELHGREWRDAL*
Ga0101440_1085008	F023856	GGAGG	MRCKACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMEYYQYEIFTEDEKYDTLY*