Scaffold Ga0101439_113631

Overview

Basic Information

• Taxon OID: 3300006614
• Scaffold ID: Ga0101439_113631
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ05 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2184
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030440	Metagenome / Metatranscriptome	185	N
F058965	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101439_1136311	F030440	N/A	NYVVYTLIGCNLLVIGLFIRAAVRVSKLESALRDMDWEALANLVGDVATLKRTIQKLNMRLNGMESADPTTVLARLPQLQQNVTPIDQQKIRGG*
Ga0101439_1136312	F058965	AGGTGG	MAFLGDFGKIFLGGANTGTVVGALTGSPTLGTVAQGGANLLSKVNTNRLDNVIGGSTARDAPTQTIPQESATSGTDREFLGFSDMEGGGFDPVYSQPQARVAPMQAQTIGVPAIIGQGLALGRGLGGMLFGGAAGIAAPMIIDQITGQPKKLRVTRKLQRDVKNAVMLLGPEAVAQQLGVGIDVVVFILQKKIRNDGPYVTRAAVRKTRQTVRKMKTLCDLYDDLRPAAKRRAPVRRAAASKVMQIKN*