Scaffold Ga0101439_109637

Overview

Basic Information

• Taxon OID: 3300006614
• Scaffold ID: Ga0101439_109637
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ05 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2303
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F001416	Metagenome / Metatranscriptome	699	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101439_1096371	F001416	AGGAG	MPLVKKRIFLAAGATSDQVLAGTTYEYVDPNTVIRVAAAVDTAGTSATADTTMDFTVNNAEFSRGASV
Ga0101439_1096375	F000754	N/A	FSRGASVSALVTGEPFGASENSNYVMNNMVTTGAIRNRPIITFTNTTAATRTIDVAVFIGN*