NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074062_12913577

Scaffold Ga0074062_12913577


Overview

Basic Information
Taxon OID3300006606 Open in IMG/M
Scaffold IDGa0074062_12913577 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012058Metagenome / Metatranscriptome284Y
F090347Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0074062_129135771F012058AGGAGMKRALIGGLSALAMIVGVEAANAQANINPNVYPNNTSEQYGARAPWEWYAGPGPVRRGNQCVTDVDSGRGYGFMKDCPAPQGQAAAAPRRPRTAHRYHRKSSS*
Ga0074062_129135772F090347GGAGVTVPGGALAEGRGGNQREEIAQRLQRLEEALEGTEYGATSRMARRLEIGFTRWHNAKSGGGLSQNLTLILLEQIPGLSADWLLRGRPEGLSYEMARVLGAPDRTD*

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