Scaffold Ga0074053_11532654

Overview

Basic Information

• Taxon OID: 3300006575
• Scaffold ID: Ga0074053_11532654
• Source Dataset Name: Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1597
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F008441	Metagenome / Metatranscriptome	333	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074053_115326542	F004352	GGAGG	MISRPDQDGDQQLRLLGDAWDKAAEHWRDGPARQFGDGELAPLLSESRSYLEALRKLTDLLETAERETEG*
Ga0074053_115326543	F002850	GGA	VTGIHADIDALKGLHQALVRYRHAQRDVIARGEDQLTATRASLEARASRLRAQLELGQAEYTACQDRAAQADPDNPVDCSGYARAVEQNSQRLEQIRLWQQRIDAEASEFSGIAGRFADLLENGLPRMEEHLVAIIASLEAARRVQPAAS*
Ga0074053_115326544	F001698	AGGAG	MAGVVNDIEALAEFRAHLMRFNHDLAENFATIQAHWRELGEIWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGVGRPPEVRRGIAGGTRQGTGRRDRDSR*
Ga0074053_115326545	F008441	N/A	AAGEESAATELRIRLGGTVWEAHREQLRAISNNMPPAAIEPAINALRAVLREVPEEFPDRNREVNCFLPPLASAIYAVMKKQGAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFDGICRRPGEPTT*