Scaffold Ga0074055_11771523

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0074055_11771523

Scaffold Ga0074055_11771523

Overview

Basic Information
Taxon OID	3300006573 Open in IMG/M
Scaffold ID	Ga0074055_11771523 Open in IMG/M
Source Dataset Name	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1425
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location Name	Laval, Canada
Coordinates	Lat. (^o)	45.54	Long. (^o)	-73.72	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081550	Metagenome / Metatranscriptome	114	Y
F092010	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074055_117715232	F092010	N/A	LKRLALILLLLAAAIAGCGGGSSDSSSTTAAALKPCDINGRQQDLGASYVTSIEVAGLSCGQAEKVVVAYHHCRLQNGGAGGTCTTAVQGFNCTEGARQSVPGVQFNATADCRKGDVEIKSTYTQNF*
Ga0074055_117715233	F081550	AGGA	LWKSLTGALALAGLLTALLVSSDSAAPVAHTASFSPCNIDGKQQNLGASYVTSLKVQGVSCGKGETVIKAYHQCRHQAGGPAGTCGATLSGFKCKDGKRTGVPNVQYNATAKCHKVSNASKRVKSRYTQND*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.