Scaffold Ga0074055_11646965

Overview

Basic Information

• Taxon OID: 3300006573
• Scaffold ID: Ga0074055_11646965
• Source Dataset Name: Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 745
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F012223	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074055_116469651	F012223	N/A	WKAGHFQDLDKLGSLPLYVEEEDYYTPDWALDEEEWLDGDA*
Ga0074055_116469652	F000805	AGGAG	MGMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWHDLAWLWGFAIALSVILLLWVWQYRSTRQKANIYPVDSFGGYTTELAGPATAFFLILTVLLTAFAVVLIVGHIVWGQRF*
Ga0074055_116469653	F001079	GAGG	MEASLQSPSALPYVAWSSSSVAVIPAEQWPLVFGSMQALKGHVQEYPGCQKLEAFVAPTGSDYRVHCYTTWDTPEQLEAFLERGYTFERMLADVA