Scaffold Ga0100365_1000031

Overview

Basic Information

• Taxon OID: 3300006566
• Scaffold ID: Ga0100365_1000031
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159268001
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93015
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (95.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089057	Metagenome	109	N
F099452	Metagenome	103	N
F103435	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100365_100003137	F099452	AGAAGG	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNVFNLYKDIINLDDVSLLAELRHTEWYRGWFTSDKRNSDLIDLSRFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR*
Ga0100365_100003179	F089057	GGAGG	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIINKDIDKLASLCTGYLAITKDEVLVKDLMNESATMAFQYMSEEDIHDVVDDINSRSVLARYLSRM*
Ga0100365_100003187	F103435	GGA	MIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYQYLIDSPDFETIFSEVLFNQSEVEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRSAYYKLEAKKNFEPLQIWYPFDMNTYTNALE*