NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100228_1074120

Scaffold Ga0100228_1074120


Overview

Basic Information
Taxon OID3300006565 Open in IMG/M
Scaffold IDGa0100228_1074120 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016285Metagenome248Y
F049684Metagenome / Metatranscriptome146Y
F080137Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0100228_10741201F049684N/ADIKRYPNNPEWQDQHRWRVSYRGVYRILKQIRKYLIVKQEKAELVINHYDKIFSKKTFGKGGFGVK*
Ga0100228_10741202F080137GGAGGMNKEDQIYHEILDHVLKLLSRHESIVMIAGALMVIAKRLYKTHLNKNEYKRVMKVATELDVEPYDIKKGTLH*
Ga0100228_10741203F016285AGGALKKLKMRVLLWIQGWTGQLNSWAWREWNKLHRQDWIKGYKKWRKENNK*

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