Scaffold Ga0100228_1055849

Overview

Basic Information

• Taxon OID: 3300006565
• Scaffold ID: Ga0100228_1055849
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1593
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F057352	Metagenome	136	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100228_10558492	F057352	AGGAG	MKLWVLHGTYESEMFTSIHLTEKGCALAAIADVVEFFGIDSDEEALRVMNDSYAYRDTDGEQTEPFEWDHERLKDMTSKQLWKVFGDWTETCWEHMSDRSYYIDATPQMVQA*
Ga0100228_10558493	F010950	N/A	MMKIWVVRQTCLYDHETYVSSHLTEKGVLITAISQVRSDLVDGFDEDEIDDYRPGLPHNPEEDLMQYSSEQLRGIVQDWWEYSWDVNEQAQYQIYETQVEA*
Ga0100228_10558495	F079212	N/A	MPLSFVKRMQRVNKDEKELIDRCIESHYNMIRMHRKAIIELSRKAIKERDWCDECFDFEIVNESGRSDKD*
Ga0100228_10558497	F070089	GGAG	VKVGDLVKYESAMNDSMDRYTVEYGLVMQISKTGHDTIAAQVLFGDTGKPCWIDSGK