Basic Information | |
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Taxon OID | 3300006565 Open in IMG/M |
Scaffold ID | Ga0100228_1044937 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2048 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F041753 | Metagenome / Metatranscriptome | 159 | Y |
F080510 | Metagenome | 115 | Y |
F086310 | Metagenome | 111 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0100228_10449371 | F086310 | GGAGG | VQVGDIVKHFLTEQIGIVMTIHNADSSLGSIQVLWTTHGDSLFGPGHKEWCSKNCLEHLTSS* |
Ga0100228_10449373 | F080510 | AGGTGG | MSWLKEDGLHRGEGGVILRKDQDRAPDISVGDRFFDVMAQRWATLLRIRPREEALGAPFESLYDGCDKSSPFIASAMCCDIGEVISASR* |
Ga0100228_10449374 | F041753 | AGGAGG | MTKYQVHFETASSDRGVRRGIRTINARNEVEAIIKCKSVVANSFGHWINRLANEVA* |
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