NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100228_1044937

Scaffold Ga0100228_1044937


Overview

Basic Information
Taxon OID3300006565 Open in IMG/M
Scaffold IDGa0100228_1044937 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2048
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041753Metagenome / Metatranscriptome159Y
F080510Metagenome115Y
F086310Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0100228_10449371F086310GGAGGVQVGDIVKHFLTEQIGIVMTIHNADSSLGSIQVLWTTHGDSLFGPGHKEWCSKNCLEHLTSS*
Ga0100228_10449373F080510AGGTGGMSWLKEDGLHRGEGGVILRKDQDRAPDISVGDRFFDVMAQRWATLLRIRPREEALGAPFESLYDGCDKSSPFIASAMCCDIGEVISASR*
Ga0100228_10449374F041753AGGAGGMTKYQVHFETASSDRGVRRGIRTINARNEVEAIIKCKSVVANSFGHWINRLANEVA*

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