Scaffold Ga0100228_1035859

Overview

Basic Information

• Taxon OID: 3300006565
• Scaffold ID: Ga0100228_1035859
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4015
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F024571	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100228_103585913	F010027	GGAGG	MAATANSSYTFAITSDEVLAPHPKSGLATIVVQGECTNPDGVSFNFIATNNLDQRYPERFKVNWNGSKARMPEVVGLGLSDDVRAAGKVSKDLYFTRGARIAIAKKCITLFPLWKQQAGAIGEEAAEEADAS*
Ga0100228_10358593	F024571	AGGAGG	MDADLNVDVIDNETGEIYREGVMLINAHIFIAKEAGKIVRDEVDIIDLDKIDGGGQMEVRSIYVDFPKTKRKSELSADAIIRAREFWQYENGGGQVRKSC*