Scaffold Ga0100228_1030367

Overview

Basic Information

• Taxon OID: 3300006565
• Scaffold ID: Ga0100228_1030367
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2896
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008851	Metagenome / Metatranscriptome	327	Y
F026125	Metagenome / Metatranscriptome	199	N
F051473	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100228_10303671	F051473	N/A	LDNINIRPNLDNKLINVGEDRFYVLGRVLVEDCGYTLDDLKNMWGLADTILRNDKVYYICMKLIDVEIQKFKIKRQTKKRKTEIVELSFP
Ga0100228_10303673	F008851	AGTAGG	MKKYKVIENYSTTEGTLYVGEVLREDDNNTLDDHKRLKDSMGRVWFVPYKYIVRI*
Ga0100228_10303675	F026125	AGGAG	MFNYINSWKSRKKPQWNIEVRLGRLTLLQLNLKNTKFRFMILNIGFEYGV*