Basic Information | |
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Taxon OID | 3300006565 Open in IMG/M |
Scaffold ID | Ga0100228_1028458 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2724 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002747 | Metagenome / Metatranscriptome | 533 | Y |
F003154 | Metagenome / Metatranscriptome | 504 | Y |
F026404 | Metagenome | 198 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0100228_10284581 | F003154 | GGA | MDTLSYALNLFGGYYETERGWRHFRVPNKTYDIRFHPRTLEWECSCPAYKFGRGK |
Ga0100228_10284585 | F002747 | AGGAG | MAKDANRFWVNACIEIYVPDQGFGEKAVKNENLDAEWFANEICNQIPKAINKNFEFSERPYSVNWAHKGKVERSS* |
Ga0100228_10284587 | F026404 | AGGA | MTIYGKTLEIKNVAEGYTKEQIEQNIEQFTEQRNEALYDLYEMKRETLAFNEGGNKEGYLELLDDTDFFTPTDFTDTYNVKDFTDEQVVEILEGMI* |
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