Scaffold Ga0101389_1005017

Overview

Basic Information

• Taxon OID: 3300006561
• Scaffold ID: Ga0101389_1005017
• Source Dataset Name: Marine microbial communities from the Black Sea in Odessa region - Od_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 630
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Investigation Of Black Sea Water Bacterial Metagenome

Source Dataset Sampling Location

• Location Name: Vapnyarka, Odessa Oblast, Ukraine
• Coordinates
  • Lat. (^o): 46.35116
  • Long. (^o): 30.5519
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033067	Metagenome / Metatranscriptome	178	N
F050768	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101389_10050171	F033067	GAGG	MHDLLRPLDDLKEIKKSLGENVDNKTMKLIDTKIAEYESDIKAVDEYLKNESMKYDTSFLDEVNTAHAT
Ga0101389_10050172	F050768	AGGAG	MEWILLILIIMMTAVTVAYSGEIYLYLSLVFGSFIRDIQNFINKLRGK*