Scaffold Ga0101389_1002007

Overview

Basic Information

• Taxon OID: 3300006561
• Scaffold ID: Ga0101389_1002007
• Source Dataset Name: Marine microbial communities from the Black Sea in Odessa region - Od_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 863
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Investigation Of Black Sea Water Bacterial Metagenome

Source Dataset Sampling Location

• Location Name: Vapnyarka, Odessa Oblast, Ukraine
• Coordinates
  • Lat. (^o): 46.35116
  • Long. (^o): 30.5519
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002834	Metagenome	527	Y
F010200	Metagenome / Metatranscriptome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101389_10020073	F010200	AGG	MNTILYIGLGFTTLGFLLFIVAMIMERHYDRKLWELKERNKYDRTI*
Ga0101389_10020074	F002834	AGG	MQNTGTFFITYFAKKHKAFITRKGQYDKPDGTKGKSFVSKQGTPCLVYWDLDNDGWRMATGEAKVRT*