Scaffold Ga0070744_10057848

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10057848
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1133
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100578481	F072349	AGGAGG	MDKVLCYSCNKSKNELSAKKSTLLPINLLLCKSCTENKLEPRWTVILAGRQYGSDHVKEHIAKKKYVGPDITASELLI*
Ga0070744_100578482	F011394	N/A	MFIDKNKNHFKFGINEWTGEPNKPTFYTKEMALKIRELKKPTSTLEMDIVKYPDFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG*
Ga0070744_100578484	F066776	N/A	SNLLHLTEKGVEIFIKRSQTKLQESFWNNYDLVIWKKDSGGYTDVKGMYRKDAWGKAEKISVSREGIWELPKRYVKYFK*