Scaffold Ga0070744_10030003

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10030003
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1609
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039137	Metagenome	164	Y
F045092	Metagenome	153	N
F060904	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100300031	F039137	N/A	KYVNNEGKPRAERQFVVVDAADEGVVVGLFGSTLPGEYEHYPNDSGLPYDMLAFDYSITKDPSAVSTWQVTMRYRAEIGAAQAFNNPTSPLLEPSEVGYRTARLSMSAEFRDTWRDFVSITAMQAIASGNYDMTDIGGNSIDVGGIPLSALVYKQEISILITDQYLPDAQAIATQIGTRNASTFLNYPSGSVVFAGCNCETIPEVGRNSIEYRFVYDASYHQIQYPVKANNGSPILAAATAGTILKGSAENVFYKQPFKYTSNFSNLSQYFTGL*
Ga0070744_100300032	F045092	AGGA	MADEINISLNVDVSSGNYRASFRPGTIQPDMATIIGSDLSQNIGTTIENLNIGADVVAGGYYWFRNLSTSTSVTFDPSIKISSCAATAAGTSFPFLNLRPGEYALGRCVTTQFSAIASTATANLQFGIMSL*
Ga0070744_100300033	F060904	GGA	VKLPRFTSGSIGRLDYKALNQAFTAIEKMDGRPQDMGEYQGAQRESFIATITGLMTDSVQGANQTTGQGTLFKTYVYDWNEVDISYGLDGSNSGVGVSDLKGARGIDYADGVTITAPKSYYPAIDFAPY