Scaffold Ga0070744_10026073

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10026073
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1731
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F032279	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100260732	F032279	GAGG	MHFIIKLTIAFALSAIGVGVSQIPQPLPDMSTTTPTDKPYEALGGFGQAMADIYRYVPPVTTTTPPAPVYRHGDCSWLPALALQAGWQPEQIPQLTKYALRESGCCPNRAGGDTVDKDCNITGVSEWSHRSDSGLLQINGVHWKPDHPQYDGLICKQMRICTQKPLLDALTNLRAARLIYIRVGWSAWGN*
Ga0070744_100260733	F013413	N/A	MRSYSATTVLYHVQNINPNRKEKAMTENEYDETFDMQMEREHQLNLDRMRQFKLIGEQISKMPDASPKVLEIEVRYLMGIIGELETRIKDLESEARRLEMLLTRAN*
Ga0070744_100260734	F014620	N/A	MFAPSIGLGGTYERPAINRDIVIIAREAKQTSVDAALKAKPKTGKKRARVHAYLMGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNEAIVWRCV*