Basic Information | |
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Taxon OID | 3300006484 Open in IMG/M |
Scaffold ID | Ga0070744_10025961 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1735 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F047683 | Metagenome | 149 | N |
F054874 | Metagenome / Metatranscriptome | 139 | Y |
F101159 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070744_100259613 | F101159 | AGGA | MLTLRDINTATGSKDACIYSDLYKDVYGCRPYNPTFESVEAFDADFEELSRLLDKEIESEAEYQQIYFDKFVARVQETMEIVQGATRERAIEIIAEAEGIRAAEFDFYGLEILEHELNLKFGSISKWLSE* |
Ga0070744_100259614 | F047683 | AGGA | MNLTIEQIESTYTVPADATRQNYYPVRAYWIPIELREQVLAAYRETNTRIRLRYRGPRSVSIGREMTRNDKTTYLRSRHRAMQDCLIADATHFTVYDYTSR* |
Ga0070744_100259616 | F054874 | GGAG | MPNENKGGTFAPADMDLLKRALRHYKDMLVSTEESERNASPELMKVANLLHRIGRIA* |
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