Scaffold Ga0070744_10016403

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10016403
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2198
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F021535	Metagenome / Metatranscriptome	218	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100164031	F021535	N/A	TLLFTLSYEEETGWGGEMEFLRGEVISESEYDNMCRDCDATNQMEYCEEDCGEICGNCNWLGEADLEAVAKCQTHKIYLDTKVPEYRKVGTE*
Ga0070744_1001640310	F000852	AGGA	MTTKREYLKQQGIAVGVRGRFSGAAKVALAEAATKGIVFTAEPSNKAK*
Ga0070744_100164035	F084239	AGAAGG	MTKSSYFLEYIKLHLISLEQDLEQIDYVNAHHFYRVKQAEIENTRHILSVATDIMNSTNERV*
Ga0070744_100164037	F000263	GGTGG	MNSEDIGLPPHLQRMVNAGVSGLDILHGELKNLMLISEQDLADALEQETLSEEAMDSMVRTECEGRLDTLVELYQLTYQLSFAIGARDEA*