Scaffold Ga0070744_10015182

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10015182
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2282
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035768	Metagenome / Metatranscriptome	171	Y
F039640	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1001518210	F039640	N/A	MNIEDLLKQSQKPAGEIDIVHYTNLILLEACRLIKDTPTTAAFTTFDQAVAETQRADCFKQVYNQIVENIKDGNNS*
Ga0070744_100151822	F061859	GGA	MTIEALLIIVGFCLFACYLVYKWQESVVDMAVPPYQEPVKPDMADQWVAVNNTKADTLDNIDNWNAKVGDKIWYKPDSGALTPTQLEQITADTVLNPKAAWPFPSGPKP*
Ga0070744_100151823	F081346	GGA	MMSSILQQIKMAKPDPNKPITHINPPTVVPDRVMPLKPGALETVVVPETEANPDKPAKPRKPRK*
Ga0070744_100151825	F035768	GGAG	MKINIEDRLLAAYNAQKLRLRDREDEDYRERVEIKAFERIIVDRVHRNLRLGLDKGTNIDLEV*