Scaffold Ga0070744_10014933

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10014933
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2303
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026556	Metagenome / Metatranscriptome	197	Y
F043403	Metagenome / Metatranscriptome	156	Y
F071245	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100149332	F071245	GGA	MSPSDHEVIVSWHAPNGEFWTPGTLSTVVEVFGLPGQRFMYSPTSDFMTLCFKSKRDADLCRILLSERL*
Ga0070744_100149336	F026556	AGGA	MTSALIKLILGIALIVIAIAIGPILGIWSLNTLFPVLQIPLTWETWAAFAILFGGSIATRLKK*
Ga0070744_100149338	F043403	N/A	NTGAFLTTGSNGTSWANEYDTVLKVNQSPPELEVKGRLVINGVDLEERLNTIERVLSIPERDVILERKHPKLKKLYDEYIHALAKYRTFDAIKESK*