Scaffold Ga0070744_10013560

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10013560
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2417
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061855	Metagenome	131	N
F068840	Metagenome	124	N
F076094	Metagenome	118	N
F095478	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100135601	F076094	N/A	PTAGQNGSATSGFTYYEDFRGIMSLENPTLLGREMTAYGYVATFANIPVCLQSIIIA*
Ga0070744_100135602	F061855	N/A	MATYTSATKQLIGNYACISTLEPTEIGLGESITVTGLGSTFNLTAKVLALPQYAFTGVDAETGAFLYNENVPRPNQIIYAATGADVEYVITYAGTITYTQVCTWVSATDVEDWLGIGTATAADATFLTLCAAAASAFCHLRRQECGYHDSLTVLPSTAVGLGTRAYGGFLYRQRGSVTDFASFDGMVSGGSNGLSPMIKQLLGVNRAQVA*
Ga0070744_100135604	F095478	AGGA	MAYVIASPKLGTVGNVFEPVDGINVEALIAGGFIKSTIKTTKSDKPSKDTNEE*
Ga0070744_100135606	F068840	GAG	MQLRLKATFNDGTTNEVVTTLATVVAWERKYKHKASEMAQGIGVEDLAYLCYEATRASGTTVPGSLDQFIATLLSIDVLETQDPKADTAQ*