Scaffold Ga0070744_10011905

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10011905
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2581
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F015472	Metagenome	254	Y
F033432	Metagenome	177	Y
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100119051	F074878	N/A	IVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0070744_100119052	F015472	N/A	MVVARWRQVLFTERSRQVMAHGYLNNGGTRWVTDNKIQVTGEVNGKSYDKMRQPMFWEQLGNFAVCYVRVGRTVFCGFTNDNDGTIQLKLEKCRIVR*
Ga0070744_100119053	F033432	AGGA	MSNYRKKFLSLWSAIMDEERWHKFQSQACKPSCKGWNAWAPLCECGENYCTFKPSGNLDEMHMVIIFKPLNF*
Ga0070744_100119058	F004583	N/A	CKEFDMRTNRNSDRLREILVSTRHQIVSLKDIQMDMLRTDSKVANQIATQISALEEVYKHQLSLVTLAENVEPKRNGWFSGHLKTKEDRLANIMD*