Scaffold Ga0070744_10010650

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10010650
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2731
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F001217	Metagenome / Metatranscriptome	745	Y
F015096	Metagenome / Metatranscriptome	257	Y
F045763	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1001065012	F015096	AGGAG	LYINHKDEDNMNTLTQWQARRKELEDKYVELMLAKYPLLTDVTTNTQRKNGTRTFQLSHKKYGLCKFATYKSGMVRKIIRSRFNDLSCYQLNPQRSITNYYMTLSDNSELNMSSYTGKQRVKITNGLARLVYLEKYLIKNYDLDSVQDVIEVDGVLYKRM*
Ga0070744_100106502	F000352	N/A	MRNIKLTESDCTFVHYVLRMYASQTSGLDHQDKVEIREVAAKFK*
Ga0070744_100106503	F045763	N/A	MSLFYWSEETISYFKFISSYLSKKQTIRKIELFVETDCIPAEEETEEMLVQDLINVIYK*
Ga0070744_100106506	F001217	N/A	MSKTKFNGFEKYFIQTALKHAIEEAEKDVLAAEADGKRSIYAPGYFTLVGNEIIDKVNSMTLKKYKD*