Scaffold Ga0070744_10010400

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10010400
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2760
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F047059	Metagenome / Metatranscriptome	150	Y
F050377	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1001040010	F050377	AGGA	MTTSTTTREYLKTQGIAVGKRGRFSAAALGVISKAVQEGVVFSDTKNAK*
Ga0070744_100104004	F047059	GGAGG	LTKSSHFMEYLKIHKISLEQDLEDARNNVPIPEDEYFESDSYYMGAIDTMEHILSVASDIMIDNERVY*
Ga0070744_100104006	F000263	GAGG	MNAEDIGLPPHLQRMVNAGVSGLDILHGELKNLMLIAEQDLTSALEQEELSEEAMDSMVRTECEGRLDMLVDLYRLTYQLSFAIQERTDFGVANEA*
Ga0070744_100104008	F000441	AGGAGG	MKMSDEYLNDQLSKAQALLWGGSETENIEAHNIIAKLIKDKIEQVGL*