Scaffold Ga0070744_10006541

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10006541
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3493
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015601	Metagenome / Metatranscriptome	253	Y
F054039	Metagenome / Metatranscriptome	140	N
F078723	Metagenome / Metatranscriptome	116	Y
F080054	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100065411	F078723	N/A	MSYDILINNLVNGESVTVTKTDGTTYQEPRPPNRTALAAAKALQNLQNQINFGTGAINQLTKERNELMDSIARLQEQNKRLQDEINTKTSATSSTARDSDSPATG*
Ga0070744_100065412	F080054	GGAG	MSTQPNYTAELEALIIDVLLPVYEQHCRQRGIASLRNEINPELLKQLKKKKTIPRLFMPKFKDNHA*
Ga0070744_100065414	F054039	GAG	MIDISPNYKRLAKILNKTRKSLTQTCHELGIDVDDIEDHVLVEVIDQCSHCNIWSQQLILDLDHNPVCPTCVRLTGL*
Ga0070744_100065417	F015601	GGAG	MAGYTKEFLVDAFMSRYVNCDHLSIEKLERLEIMANDLYDRVGRDQFRVYSCLDAEAIREYKNKFALN*