Scaffold Ga0070744_10006068

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10006068
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3627
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001900	Metagenome / Metatranscriptome	620	Y
F003543	Metagenome / Metatranscriptome	480	Y
F005479	Metagenome / Metatranscriptome	399	Y
F028174	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100060681	F028174	N/A	LTAREKVTNIRDVEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0070744_100060682	F001900	GGAG	LDNSGLLVQVASGLERMMYANQSGPLKDSTVAQVSAYVYYEAAVISKLTTNKPFQHAFTKIMFDQINTDFGNYIDALARTKPKSLHHVYEWKKTGNKTARLFKLNNISEQGLSFRINYQLLPSRSMVPAPKGKRRHMFANKAEVMEQGNPLVIRPKNAERLVFEYNGETVFMPKGAAVTVKRPGGSTARNQFSLAHSRFFSGRLVNESIKRSGFQRIFNSSMTKALKVPADIKKVQYSFSPNTIRSQADAALSAAFGGAM*
Ga0070744_100060683	F000258	GGAGG	VTANYKLDAMLELRKYLWKELYTRNIFDEDDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTLYSTSVADINEIRNYMTDEFRRMDESARDINKWTGLSDKFKFHSIWVADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL*
Ga0070744_100060686	F005479	AGAAG	MPELVNTLKALKKRDHEEKKFQASLKGVDIGEYENDKKGGPSFEDIELRAAGINATSNDVVSLQGNFAAQAGFGIGAGLGYSRE*
Ga0070744_100060687	F003543	AGTAG	MADETISTRIVANADFSALIADVHKVTASLSKLQEQLANSNKMLANQIAVMNRSFSDTLRSTGQFSTHFVSLQSDVEKFGKNLDGGKLKLNQYFNTFREHARTSGGLIRDLAKQQVALQNSVLQPLGRNAQGLMQFNVHVPRGLDEVKNKAAIARQELQIMNKVLQDGAGQLIN