Basic Information | |
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Taxon OID | 3300006484 Open in IMG/M |
Scaffold ID | Ga0070744_10005280 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3877 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002869 | Metagenome / Metatranscriptome | 524 | Y |
F077307 | Metagenome / Metatranscriptome | 117 | Y |
F077308 | Metagenome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0070744_1000528012 | F002869 | GGAG | MTNEITAEMLDRTMVWCQQNMFWPKGSAIQRMTDFYFEKTRTSVKEDWPETFSLQELAETLGEESVRYRIYYSKDKLTQRLFVFRPHCVWDEQKKMLDLGFVVAQDGDSDNIPDQPVEEMKE* |
Ga0070744_100052803 | F077308 | N/A | MHIKRFIDRVSNIESRQGKDVVIPLSEARGLRDELAKLLVDHYEISDVKKNTSEIIQLELVGGKF* |
Ga0070744_100052809 | F077307 | GGAG | MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEDDLAHITEESLKHNMPYNQIPRDKIGEKL* |
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