Scaffold Ga0070744_10005192

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10005192
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3908
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F004234	Metagenome / Metatranscriptome	447	Y
F009004	Metagenome / Metatranscriptome	324	Y
F015420	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100051925	F001808	N/A	MIFRLSVIILMLSSCSAQYHLNKAIKKGYKCEQTGDTIRITTLDSIPVIINNDIIWEKFITTKDTIIKYRTVYTPLTRQDKRLQYKIQVKTIYKDRLVYKYKYRSDGQKAKSEVKKAKAERPRPNGNLSLLFVGVGIGLLLSYLFKFARQRYMF*
Ga0070744_100051927	F009004	N/A	MKTFNQILDYLEVQQQEDKLNTNQLHLIIQTLTTFLNKEQLQEIENLFNQMNRINEETN*
Ga0070744_100051928	F015420	N/A	MKKLINYFTPVGEEQKACAIAMLIVTTVILSILFLFTFLELIL*
Ga0070744_100051929	F004234	N/A	MNFINLFKRDNTYFSNWTTDYDSTVYIAGTIEPFTYNAEENDEDYLSMYVLDEVEINLLKSKL*