Scaffold Ga0070744_10004661

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10004661
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4110
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F009888	Metagenome / Metatranscriptome	311	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100046613	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGVRTSEAHDLSELGTVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTQANAMKVGK*
Ga0070744_100046614	F006623	AGGTGG	MNCQNFSIEPNPQNPADYIIKGDIYDNDGVFVGDFGPDGTSMFAWWSTQDEAFQFNYALQFSQIMAQEIADGVAE*
Ga0070744_100046616	F009888	GAGG	MALIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIQTGASYTFPSGSVTLTKQYSAQGILSVLNPAAYGTAADIRLTISFTVSTTVRRFGPLEIEVLAP*