Scaffold Ga0070744_10003891

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10003891
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4479
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011299	Metagenome / Metatranscriptome	292	Y
F043940	Metagenome / Metatranscriptome	155	Y
F077309	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000389112	F043940	AGG	MKNRFRVEIYDENKFNDVTIYSEQGVDKEYLTELAFSNRRNFFGDVRAYVYDTLKKTKTTALYLPSEVINYGRTNKLTRDELGL*
Ga0070744_1000389115	F077309	GGA	MSVGSCIILFMTNELVSSVYTFICDPDECDSLIQLTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATITSLNQTKEG
Ga0070744_100038914	F011299	AGG	MMTRKDYVAVAEILKYASDKTHPAVFSKMVNDFAEMFAKDNDRFDVTRFHEASGYHVPKFTSR*