Scaffold Ga0070744_10003468

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10003468
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4737
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y
F070119	Metagenome	123	N
F071246	Metagenome	122	N
F072347	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100034681	F043404	GGA	MIDLKDPLLIKLADDIAGLHIDTGIELEQWETAYDFVKHFYNTEEYVQIIIREKK*
Ga0070744_1000346811	F071246	GGA	MGKSQTESVADKIVALLADGRISQAQWRLWIPRRITENNKMIIANAKNFADGINEVIENEEIGISKELLFDYQTGKENGQ*
Ga0070744_1000346812	F072347	AGGA	MDNRTKAEILVQFTQDNFNDEMYEEFFDYNDLGIPLSIAITQDMVILTDSGEQLLEETWIELCLLFGADPNGEYETIDDVTGE*
Ga0070744_100034682	F016662	GGAG	MTYLVAMTEVIYDEEYIIKEMLETGEYGINAHPISHEAMVEFVKDREWQIEHNLFLAKYDIPVIITIKDEDGTDLFFAENKMQEIK*
Ga0070744_100034683	F030094	AGGAG	MKLRGIFEGTFESVWSMEVPQAEWDSYLEQHPDFDENDRDDIQEMWEHFKSIGCYDEIDDTVDTDVIMTGIETYNVEVEIN*
Ga0070744_100034687	F007525	GGA	MKTLEGVTVTYAEMIPTSKQMAEFYVWQDGCESYATITYLDRTVEVERNGEMYLSIPDLVNGELSEHYQNIVKYSDHLQDIGIDDDIQLTQFIKTISNSGYQVYHMNPWWEVFSHNEDMGEVYDTFYEAVDGGIDYITDDSNWED*
Ga0070744_100034689	F070119	GGAGG	MNLNSYKAFDFVIPNCLEPGDIIEWEEEIYTVKKFDLLSDGFIIYAVDEMEDDVELLIPDNIVLSLMEEQ*