Scaffold Ga0070744_10003279

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10003279
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4869
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F019834	Metagenome	227	N
F060914	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100032792	F002398	GGA	MTALISIFLLSSLNPIKNFVPLKTYISENAKVHCYVYFINEEIPDFPRVNTIEKSKKEFFDYLDSIDIEYSKVGSYYFFNRKRK*
Ga0070744_100032793	F060914	N/A	VQQKDTQLKRLIKVRTDISASIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNAKIIESIEELKALGIL*
Ga0070744_100032795	F019834	GAGG	MKELKFSITGTIFVPDNVEYEYDFENQIYSFKINDKTYSLIAGLEADDKEIIVTDDNFKSHDIKPFEYEDAYFED*
Ga0070744_100032796	F002406	AGGA	MENLKWIRAMSDRLRDELSKEYDDETKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFEDAE*
Ga0070744_100032799	F006182	GAGG	MKVEFNITGTMEVPDDAILHYDVAGKLYALEFNDIMYMLQACVVAEGGAWGNEIITDAQELENHSIKNIRYNDAEFLANIE*