Scaffold Ga0070744_10002333

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10002333
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5738
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F006988	Metagenome	360	Y
F105190	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100023332	F105190	AGGTGG	MTCELCKTDLTAFDIRMQDLLQGICLNCGKAGDWQHMTPEESRRCAELHKWANMTNAERIAYDRNRGN*
Ga0070744_100023333	F001332	AGG	MTEQLAEMTAAIAKAEIAMKAAAWQLEKQTEDIAMLRKALFELAYVAEENGIYLSNLTKSTQDAIVAMRLGGFK*
Ga0070744_100023336	F006988	AGGA	MTIRPYTGNKDAVHAAKREGTKVFVDYCCYLFGVTNIGIFNDRNMVGTTPPKKSVHATWRAVDLKGTQEQRFHLINFLYTHRDILGIEEIHDYAGTYKNNPKGWGAGYRCDRDAWRVYDKNTIGSKGAQWVHVEISPLLADHPDVVHHAFKTIFGA*