Scaffold Ga0070744

Basic Information
Taxon OID	3300006484 Open in IMG/M
Scaffold ID	Ga0070744_10002075 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006484 Open in IMG/M

Scaffold ID

Ga0070744_10002075 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6048
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (23.53%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6048

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (23.53%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F005588	Metagenome / Metatranscriptome	395	Y
F006659	Metagenome / Metatranscriptome	367	Y
F042341	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000207512	F005588	N/A	MPDPLAHSPDMITTIRPNKMPAFWWLVPWAYARTLHMSANAVKAYADRLDDILDIQRGIIEQQAADIRLLKARVRDQDDAIIKGTAITPDAYPHE*
Ga0070744_1000207513	F000957	N/A	MSSFQHLEGMRNLLIEIYEVNERIMTGDICSAKAAIASTNVKKILAHYHEALHEDGATKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV*
Ga0070744_1000207517	F006659	N/A	MKKDIKSPSEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKST
Ga0070744_100020755	F042341	N/A	MSSPRPKSDPPAVQYGEPHFTFRVLGRVKPTHDPKCPTPFGYCWKGFGDIHVDPRQSEEEMIDTVAHELLHDALPYLDEEAVEKAANRIASAMWKLGYRRTVIE*
Ga0070744_100020757	F001923	N/A	MSAPLDPESIPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVIRRVLAAAITAALVGYAITDHIESPGLRMGVVGAAGYAAPECLDYLMRYIKNKGDAEVGPAKKPHGKSKAPGKAKRKR*
Ga0070744_100020758	F003583	N/A	MAKAKPQAKPSGSANLLLAVTLLTVFAGVSALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGLAVFLRSRRQKAS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070744_10002075

Overview

Ecosystem & Geography

Associated Families

Sequences