Scaffold Ga0070744_10001341

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10001341
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7395
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F024558	Metagenome / Metatranscriptome	205	Y
F033434	Metagenome / Metatranscriptome	177	Y
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F062765	Metagenome / Metatranscriptome	130	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000134110	F081346	GGAG	MAKPDPNKPITHINPPTEVPNRVMPHKPGYNDQVVVPETEANPDKPAKPRKPRK*
Ga0070744_1000134112	F035768	GGAG	MKITIEDRLLASYQAQQMRLRNREDEDYRARVEIKAFERIIIDRVQRNLRLGLDKGNNIDLEV*
Ga0070744_1000134114	F062765	N/A	MGPVSMGWYRTRGLTQKQTKTATENTMFTTIGEPFTSESITTHYSCGRIDVHNVPNEPYGDEINVPPMLSTDWALFSNWLDTVETMSVWTLADLVTAYEQHNPPITWDTHD*
Ga0070744_1000134117	F039640	N/A	MNIEDLLKQSQKTAGEIDIIQYTNLILLEACRLIKDTPTTSAFTSFDLAVAETQRADCFKQVYNQIVENIKNATT*
Ga0070744_1000134119	F033434	N/A	MLFKKQEIHSIDFTGTEGLNTEGWETWCEQMQLSHLHGWLLPQLVAWYGSWTLVYDEHSNYDCLATVKLNCSDPKSKAFYMLSRVKRSLLVPQQTKTPDYASLTPLILMGLKRMQGINYETFRTSSGLQYMLEPRLLDALVLNDGDLEEVNSLGSDRLLEIQKQGLTTKSGKTAGSMKPAKSTWSLTGIQDTEIGHLPKITQTILTQCWLAHPELRTPYMILDLNDWDTMPKPLVTNDIFKAVQTQQPTKTKELADVLPWDL*
Ga0070744_1000134120	F004133	GGA	MKYTKEITDKLIADYRGGVTVAEIATTLDVPERSVIAKLSSLGVYTKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIEHKLAQSDPKLHYTRQTDHLFADV*
Ga0070744_100013414	F024558	AGGA	MIVILYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVNRPKGFTDIQIPVGNLDTETPTVRIRYEKLRWHDGTLKTLLVTPDEELALTLNPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQD*
Ga0070744_100013417	F039639	AGGTGG	MNIDREFVKWFYEDAYPEQGSNRRQVYSTTQNSQNINIIDYWMREAFKAGAVAATNNYEVNALEQFEAFNINRNYPL*
Ga0070744_100013419	F061859	GGA	MTVEALLIIIGLCLGICYFVFEYQKAAIPPYQEPVKPDMVEQWKAATKADTLDNIDNWNAKVGDKIWHKEAAAELEPTPINPQATWPFPTGRQP*