Scaffold Ga0070744_10000893

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000893
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8812
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y
F049635	Metagenome / Metatranscriptome	146	N
F071250	Metagenome	122	N
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000089311	F019140	N/A	MKNTPLYESLKMTYEREREIVNSLANYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMSKPNEEK*
Ga0070744_1000089314	F012871	N/A	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEEKAELIKENEMAVNDDSWRRMLKEDIDSFKQGKYTTLELRGVSMMRWLEESKRITAETFTDDEYNFCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGLRELYKLYLSKQ*
Ga0070744_1000089319	F049635	N/A	MNKAIYKTPFGRLVKSQFKTLTNFKTALRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND*
Ga0070744_1000089320	F071250	N/A	MKKLVSLENRVEKLLKKYKTLRNNNKALCVKVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNHATNKKKEQLIKPLLKR*
Ga0070744_100008935	F027518	N/A	MNTETEIVLIHEQLQEMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLLVQFVLKFL*
Ga0070744_100008936	F039140	N/A	MKDKLKVWIKELLTSSTKVSSKRIVAIFVTINLIVLSYIATFTYYVCPIAMFDTLALLTGGLFGGTVIERFTKQKNGSTENSSEDNS*
Ga0070744_100008938	F021113	AGGA	MRKNLLFAVLLVLGTTIIWTVVCWQIFGKIHANNVQENVQKQDSVINYNAGEYDRLLAEQIELYKQLRTYEDAQLTAKTTYQRTRDIVLIRDTIVRVDVLRLVNSCDSVIASDSLVINNLKEQLNIEGEKVNNLQETIVAYEQKEDILTEQINTLNAEKKKLDKQKRRRNRALIVTSSVAVLSTFVLSILL*
Ga0070744_100008939	F082704	AGAAG	MPESKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIEFSLKFYVPESKVKLKEQK*