Scaffold Ga0070744_10000844

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000844
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9071
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005589	Metagenome	395	Y
F021538	Metagenome	218	Y
F040107	Metagenome	162	N
F090404	Metagenome	108	Y
F101175	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000084412	F101175	N/A	MLLIVLSLLQKIKMNGTDALTLLRAGYILRRKAWEPDIKCKAYFSDDMKSVKINIDDPILFALDTHLVPQWVPEKPEFSSYVSYYDVIDNGDLLEDDWEVVDEIL*
Ga0070744_1000084417	F021538	AGGA	VDKTTIINCDCLCHSLHIRPDTESKTVDISLWNYGFNDGKLNWKKRLKILFDGFAYSDLVVLDKEELDLLIEALQEAKKNM*
Ga0070744_1000084418	F005589	GGAG	MSKFRHSFWRYVPSTEKFKSEFKFVESIETDSDAVPEFHDHYCIDQVVDLVTGQMRVKNHSAPEYCVSKYVGFNLSLPPVEKANKQEIYVVIHRSSFSHKKIEFDEFLEPKEKRYTQEEWEFLLSVIEKRFNKQKDWAKEGIRVPSQYEDGTQVFKTQEEFRAFSLGRRAYFLYHLVLNYRFTHLIRRLNIGYTSG*
Ga0070744_100008448	F040107	GGAGG	MTGIEALSLLKDGKTLRRTSWEAHEKCKALDFFGKWIIHLEKVQDDKILDKEIEKIFQNSFAFTKTTFDDFFGLFDKIEAGEFLHDDWQIVE*
Ga0070744_100008449	F090404	AGG	MTGLGGSRMKFADVIDSLMSGKRVRKTNWESTTAFLIYDKEDNTFDFYEVLDGEVCRTQFYSTLDLTPKDLMSDFWEVVE*