Scaffold Ga0070744_10000766

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000766
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9491
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003379	Metagenome / Metatranscriptome	490	Y
F004431	Metagenome / Metatranscriptome	438	Y
F011299	Metagenome / Metatranscriptome	292	Y
F017134	Metagenome / Metatranscriptome	242	Y
F024319	Metagenome / Metatranscriptome	206	Y
F051930	Metagenome / Metatranscriptome	143	Y
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000076612	F024319	AGG	MTNRIWESRNDYLVESDAKRLGYVSCSAGCGRVTAYSLCVMCGGNYAEHNLVGVR*
Ga0070744_1000076614	F004431	AGGAG	MTITYSIWDGAQLLGVDFKATSADEMNKVVADLMKVSRNVVAHMRKVEM*
Ga0070744_1000076619	F076101	GGAG	MYKITLSYDGNAPHWQQDYASEFDAWKDFFAFTDWGFANEFSTVNIYNSEMKCFTKHFYREERKVVTVK*
Ga0070744_100007662	F051930	AGGAG	MRIQYVSTYISMSEDGLVEKLLCPVDQSILFCNQDLEDNIFLYCLQCEYKNNMGSSTYQNIVKLVEAQNNVR*
Ga0070744_1000076620	F011299	AGG	MTMTRKHFEAIAEILNYNSGKTHPAVFSKMVLDFAELCANENPNFNVTKFYEASNYVIPKLSTR*
Ga0070744_1000076622	F017134	GAGG	MELFTVACLNYEICGAQETFDSVEEYEIYGDDWTCGECYDSEEMEFYELGGWADSDALASAGHGMDEDY*
Ga0070744_1000076625	F002245	AGG	MSNLMKVPHTVEFEAVIDLDKIPANLLPALIALDTYSVTKMCKEATLHALGMSNVIPLANENNTWAEVTIKEGN*
Ga0070744_100007663	F002489	GAGG	MQEDQNKEVSSNLEDNLPMVNYIMLHRMYDLLTLISNKIVGSEDTQKMIEYHEAGYLLGPAPSFTPGEEE*
Ga0070744_100007668	F003379	AGGA	MKKLSALVSTIAIAILSGVALSKFLNWAGQVEIFDFDLDEDIDSEEF*