Scaffold Ga0070744_10000678

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000678
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9996
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100006783	F080057	GGA	MLTDEWKNIVTKGHRLEEFTSVSSMTQYKIQVNLEILEGCSYMCPGCFVKRKGNWNPNSIATFHSLAYELKDRDDIVLDDIVIGPTDFYGAQNLEEIINNQRLADAISMIPKDNRNIQHNCSILGSLSEKDIEGKIKAIENSPLGKAVEAWDVQIALDLNRLMNDQKYLDALDKRVETFKNSSLNFEISMATNIVQGVENIIYEAIEFVRTRYETVIEVLPSVVRSFNHSAKHGNKLFEWNEMLSKLSIDTKRFKEKFHFLQGDVSHKVFHYAVLSIYHGDMYLSPFVYENAQIHTDDFKVDNGWLWLPDADISDYILNKKNEIVQRQIKESSDKECGSCKYLNICANRMVPMIMDTVFKGRKECILNKEVIELFDDEIYRGCS*
Ga0070744_100006785	F042906	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEHQLDKAKDFIRSITDQGILVDEMLIGPTDFLASENFYEVMPHLEDIINENSPILAFVSTLIDGDLERFVKYISNNINIDTEIEIGIATNPYNFFSIPYLERTKKALAYLDENLEHEITYTFVINIRDYNLDYAELHAYAIDKFDTILDFVPSVSRSHKAHIILATLDKFNEYFNVLSRDSTLNNIMIDHSHAGMNYTVLNYKKGEWYLSPFMYENMAIYDDMFKVESLADATRITEEQIERAKGTECEECPMFFSCYNRKIISLRDYLGVDRCIAPKENMLNNIHNYNGPAQTMYEWDGYSVENDKNGYRKKFLVTKDDDPELERLRNISYVSKT*
Ga0070744_100006786	F042905	AGAAG	MITKLNSTYAGYYKYDEEKSPTNIDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIEGSYHPDEITIGPTDIFDAENFSEIMNHPYMEKLYGISGVGFTSTLLQPYSEVKEKLAKIWSLYRNIHRVPDIDFKIVLDIDKYLDNDLDEWYKNLELFKYGSVQFRVNYHKDVFKRIGYNDLCQKVFDDFNAPIIITPSFLTDRNARGKVDQHLANFRRDMIEQKIDDKWLNLYTFFDARFNGYGCQNYSFYNNKLYINPFLYDVIIQRTPQFETTMDNNTLYDNIDYAQQVDDCNGCQYMMSCAERNIHLYMESRGLENCVALKEYMYASH*
Ga0070744_100006789	F040106	GAGG	MTMQKSYCKQMRYSGPESLAPSDATKFDVLIQMEVLSGCEQGCLGCFVDKAIDPEVNQQIIDRAKELADGVKRVGGNLREFVIGPTDLFSAKNTKDILTNPTVQAIMREHTGARIASPAKFDKASMEKVREIFAILDDLDAYRRDMVIEFIMPVGRINEMLDDDEYYNSVMEKVEFFKNETPKMMDWSWTLQASNVVGKQIDKEKYNRMIRRSYNDYGTIVEMNPAFARAPNQIIQRNNLFAWNRFLESVIDDENSKEAVMSMANLYCNSINFVGITIVPGEHGPTTHLNVMLHEQAFFLSNKNLDVTGLSFEEILQRKNELITKGINRSSKVKDCSDCKFAIACANRLVFEAQESLNIDGCVLPKEILKHYNPFDFTWNDDATQYKMKDGA*