NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070744_10000626

Scaffold Ga0070744_10000626


Overview

Basic Information
Taxon OID3300006484 Open in IMG/M
Scaffold IDGa0070744_10000626 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10390
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052598Metagenome142N
F054041Metagenome / Metatranscriptome140Y
F057381Metagenome / Metatranscriptome136N
F058151Metagenome / Metatranscriptome135Y
F072350Metagenome / Metatranscriptome121N
F099316Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0070744_1000062620F099316GAGGMWRIRKTGEEGGYIVRSKELAEQLLDQWARQGAIWEMVEITEYELGDPMEQ*
Ga0070744_1000062621F058151GAGMELQDKTTISTLVDIVPTDVSGKWVKKEDLYPFAAAVAAYVLTRVEKNINDSNL*
Ga0070744_1000062622F052598GAGMIPTFKLTVTDEFHSDFVYETDDKEEVLDRVALWLSQLDNTPIYNLNIEVN*
Ga0070744_1000062623F054041GAGGMSTIFTCGHKAEDDEDGWTISTKAYTRENKRAVDYRTVCNRCYHVYETEGLVLYGEADVKEWFGGPND*
Ga0070744_100006265F057381AGGAGMRYFFNDAEVTESEYLELMSRSIPDVPAKFVMSVPAVRAVTKPMPKKSVAKPIFSGSSKIDKAIELFKNNQGLSDTQFITLFQLKLGDISKGNASIYLKKVKERTK*
Ga0070744_100006267F072350AGGAGMQDYYNAKFTYDFDDKRNRYDVTEWSAPINGVRIGKVVFFSDVMEECIAMAEEFNYNYKAGQEWELFNNQECEFV*
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