Scaffold Ga0070744_10000524

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000524
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11120
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000868	Metagenome / Metatranscriptome	853	Y
F003965	Metagenome / Metatranscriptome	459	Y
F014142	Metagenome / Metatranscriptome	265	Y
F019325	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100005242	F014142	AGGA	MNSLTVITEGSHPMASSNTKDKNIFRLANGNYISRMAYVHMVASENMISHRYLSPNESRWVFDYKKVGSN*
Ga0070744_1000052427	F000868	AGG	MSFLENENQMVIDAIYSEIGEQLVEDWVNSNLDEGQMFADFRFAEMSNDNYIKGRFNRHYNLTPEDQYYIEWDEEK*
Ga0070744_1000052430	F000263	GAGG	MEFTPDYNIPPHLQRMIDAGVSGLDIMHGELKNLMLIAEQELAEASAREDETEEAMDSMDRTRCEGALDTLVALYELTYQLSFAIGARNEG*
Ga0070744_100005247	F003965	AGGA	MNSTITMCKEHTPFKPAISTVGDDQFTFCEVCEQNIERWYDDTDDERLPMWRDWKVSK*
Ga0070744_100005249	F019325	AGGTGG	MTTLNETLFSTIVHDYHNGGVKSSYGLDAYTRKQILIYLLRSKGCNCINCL*