Scaffold Ga0070744

Basic Information
Taxon OID	3300006484 Open in IMG/M
Scaffold ID	Ga0070744_10000492 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006484 Open in IMG/M

Scaffold ID

Ga0070744_10000492 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11392
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (23.53%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11392

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (23.53%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F048316	Metagenome / Metatranscriptome	148	Y
F049637	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000049210	F049637	N/A	MTMIEKDAVGIPSTLIAIFANVTTIAGLQFVNVIFTLIISILSIVYLIYKIGNERKKNKDNGKS*
Ga0070744_1000049212	F048316	GGA	MKKFLDWAKGFLSEGGEASSKRLVGVISAIALSYTLIRNQNEPLVYSVAALSAAALGITAAEKIFKKPTDKNENQS*
Ga0070744_1000049216	F001775	GAG	MEFSTDNQKIRIAILAFIAGVILAFVVFPRPEVETVYKFETKVETDTIYTRVVDTVYVPKISIKSHFLRDTILKDYQPKISLFKTSIPSEYGSTHVSGEVLGEVLKMTAINDFKIPVVTNTITNTETKTILQKAKGIYLGAGVNSLLDPSVKVSYLDNKYLFQYGYQPVTKIHTLGISKKLF*
Ga0070744_1000049217	F036704	N/A	MWIEIDVMLAGSTMDWKELGLEVKHEFVRRMVRVDDIAYVQELVNDIQIIYFYDKTSCLIRGSYTEIRDELLHLDQEGQLD*
Ga0070744_100004929	F029443	N/A	MTLANLVAKLKAIQEAHPMIRTFGEGDIYDYTDNGGEIVYPVFWTVVRPSQYSNTTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNTYSFNTPPQASVEFFQERFDDFAAGVSIDIEITAPIPLNLCQIPVIA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070744_10000492

Overview

Ecosystem & Geography

Associated Families

Sequences