Scaffold Ga0070744_10000301

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000301
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14054
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (61.54%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025748	Metagenome / Metatranscriptome	200	Y
F029757	Metagenome	187	N
F038679	Metagenome	165	Y
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F081348	Metagenome	114	Y
F093882	Metagenome / Metatranscriptome	106	N
F103267	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000030112	F081348	GGAG	MFEKVPYGVKVRVRGNEQAGFIAEYVICPYRFLSFMDNWNLISRYTHTPFTKHGTFPTLELAKEAAMTKYDSLINHFRHDEEQKKIAEAQRKVVWKHP*
Ga0070744_1000030124	F025748	GGAG	MEIFALLGEWDYEGSVLLGVYASEDEARTAHGVYTRDGDRFIQRYYVERRTLGAPVDSDEYRIYIG*
Ga0070744_100003013	F029757	AGGA	MLTLSDINTLTNSKDGDIYSDLYKDVYGSRPRYAQFRDLEEFQDDYDFLCNKLDEQLEQQQVEQARNFVEFVARVEETMQIVEGATRERAIEIIADAEGISEDEFDFYGLEILEYRFELKFGSISRWLSE*
Ga0070744_1000030137	F093882	GGAG	MTNSDYLTMAENRFASVQRYFPNSSEFNRLFNIILDMTSKMSPEERDMHNAKKIETPTAKAARLKEEQRVLDQMSMNKDSNSI*
Ga0070744_1000030146	F038679	GGAG	VTNFLETIKWLGTICVIIAASCRAFEFHAVDLILSIFGAGLWAYVAVVAKDKALFVVNAFIVSILIVGVIV*
Ga0070744_100003016	F047683	AGGA	MTLTVEQIESTFAAPTEGLADSYYPVLAYWIPIAKLEEVRAAYRAANTTIRIRYRGPRTVSVGREMSRPDKTTYLRSRHRAMQDCLIADATHFTVYDYTAR*
Ga0070744_100003017	F103267	GGAGG	MEVELFTFPTMENPKAVEDTFCDLLNAKRRGESLPVEALDWMDTANNWLLESK*
Ga0070744_100003018	F054874	GGAG	MPNEAKGGTFAPADMELLKRALHYYKDMLTRIEESERSLSPELTQVANLLHRIGRIA*